rs258322809 SNP Detail

Summary

• ID
  rs258322809
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:64082913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCGTAATT TGCGTCTTAC
  TCTGTTCACA GCGACAGTTG CCTGCTGTCA GTATGCTGGT TCAGAAGGTT GACGAACATT
  GTTACTGAGC AAGTAGTAAT CTTGTTAATT TTCTAAATTT GAAAAAGATG TTAATTCTTG
  ACAAAGAAAA CAGATGTGTC GTGGGGGACG CATGTTTGCA CCAACCAAAA CCTGGCGTCG
  K
  TGGCACCGCA GAGTGAATAC AACCCAAAAA CGATATGCCA TCTGTTCTGC CCTGGCTGCC
  TCGGCCTTAC CAGCTTTGGT GATGTCTAAA GGTCTGATGC TTTGATATGT GACATTTAGT
  TTTAACTTGT ACCTAAGTAA ATTGCTTTCA TGAATTCTGT TTCTCTCTGC CTGCTAAAGT
  CACTTATGCT TACATCAACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377838342	MGP_WTSI_9_64023438	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258322809					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377838342	MGP_WTSI_9_64023438	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64082913 () rs orientation: forward

Symbol	Name	Function Class
Gm22455	predicted gene, 22455	1492 bp upstream
Gm22571	predicted gene, 22571	242 bp upstream
Gm23136	predicted gene, 23136	1030 bp upstream
Gm23344	predicted gene, 23344	516 bp downstream
Rpl4	ribosomal protein L4	within coordinates
Rr368800	regulatory region 368800	1438 bp downstream
Rr681195	regulatory region 681195	1468 bp distal
Snord16a	small nucleolar RNA, C/D box 16A	109 bp downstream
Tssr85597	transcription start site region 85597	659 bp downstream
Tssr85598	transcription start site region 85598	205 bp downstream
Tssr85599	transcription start site region 85599	18 bp downstream
Tssr85600	transcription start site region 85600	1338 bp upstream
Tssr85601	transcription start site region 85601	1743 bp upstream
Tssr85602	transcription start site region 85602	1810 bp upstream