rs258323362 SNP Detail

Summary

• ID
  rs258323362
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:98179949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATAGCTC CAGGGTGACC
  GGTGGGATTT CATTAAAAAA AAAAAAAAAA AAAAAAAGTT TCCCACTCCA TGCTAGCAGG
  TTGACTGGCT TGATCTTCTG AGGATATTGT GCGACAACCT CAGCGGCTGT GTGTTCATGC
  ATGCAGCAAT CCCGTCATGC CCAGAGGCCA GCGCTGAGCT GTAGTGCCCC TGACCTAGAG
  Y
  TCTGTGAATC TTTTCACTCA CCTTACTCCC ACCCTTTGTG GATTGTCCTG GAACGTTAAG
  GAGGGCTTGT GATTTGTATG TCCCATTTGT GGCTGGGCAA TCCACGAGCA TTTATTCTCT
  TCGATTTGAC CATTTGTGGG TTTGTGCATT AACCACCATC CCCTGCACTG AGAAACTTGT
  CTGATGAGGT CTCAGAGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365959497	MGP_WTSI_5_98461109	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258323362					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365959497	MGP_WTSI_5_98461109	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:98179949 () rs orientation: forward

Symbol	Name	Function Class
Antxr2	anthrax toxin receptor 2	1073 bp upstream
Cpgi16083	CpG island 16083	530 bp distal
Gm42759	predicted gene 42759	453 bp downstream
Rr615103	regulatory region 615103	557 bp distal
Rr615104	regulatory region 615104	837 bp proximal
Tssr1554	transcription start site region 1554	1128 bp upstream
Tssr47433	transcription start site region 47433	1366 bp downstream
Tssr47434	transcription start site region 47434	1354 bp downstream
Tssr47435	transcription start site region 47435	980 bp downstream
Tssr47436	transcription start site region 47436	801 bp downstream
Tssr47437	transcription start site region 47437	780 bp downstream
Tssr47438	transcription start site region 47438	1210 bp upstream
Tssr51988	transcription start site region 51988	1474 bp upstream
Tssr51989	transcription start site region 51989	1463 bp upstream
Tssr51990	transcription start site region 51990	1443 bp upstream
Tssr51991	transcription start site region 51991	1325 bp upstream
Tssr51992	transcription start site region 51992	1270 bp upstream
Tssr51993	transcription start site region 51993	1098 bp upstream
Tssr51994	transcription start site region 51994	1052 bp upstream
Tssr51995	transcription start site region 51995	836 bp upstream
Tssr51996	transcription start site region 51996	774 bp upstream
Tssr51997	transcription start site region 51997	743 bp upstream
Tssr51998	transcription start site region 51998	702 bp upstream
Tssr51999	transcription start site region 51999	669 bp upstream
Tssr52000	transcription start site region 52000	641 bp upstream
Tssr52001	transcription start site region 52001	627 bp upstream
Tssr52002	transcription start site region 52002	603 bp upstream
Tssr52003	transcription start site region 52003	567 bp upstream