rs258330555 SNP Detail

Summary

• ID
  rs258330555
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58660504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTTCAGG ACTAAGTGTC
  ACATGCTTTA TGTAATTACT ATGAATATTC AAGCCTTCTA ATGAGAATAT AGGAAAAGGA
  GAATTTATAT CTGTTTAGAC TTCTAGAGCA ATCAGATTAA GGACTCTTTA AAAACTTATT
  CATAAATGGC CATTCAAGTC TTATTATTCG TGTTTTATAT CCAGTATACT ATATAGAAAT
  R
  TTATACATAC AGGGATAGAA TAGTTTTATA TATATATATA TATATATATA TATATATATA
  TATATATACA TATATATATA TATATATATA TATATGTATA TGTGTGGGTA TACACACACA
  CACACACATA TACATACATA TTTCTATAGT ACTCATACTG ATGCATATAG TAATAAAGAA
  TATGCTATAT TGTGTTTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss402923740	MGP_WTSI_19_58746562	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs258330555					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402923740	MGP_WTSI_19_58746562	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58660504 () rs orientation: forward

Symbol	Name	Function Class
Pnlip	pancreatic lipase	within coordinates
Tssr5571	transcription start site region 5571	1049 bp upstream
Tssr157258	transcription start site region 157258	1865 bp downstream
Tssr157259	transcription start site region 157259	1717 bp downstream
Tssr157260	transcription start site region 157260	1704 bp downstream
Tssr157261	transcription start site region 157261	1642 bp downstream
Tssr157262	transcription start site region 157262	1611 bp downstream
Tssr157263	transcription start site region 157263	351 bp downstream
Tssr157264	transcription start site region 157264	293 bp downstream
Tssr157265	transcription start site region 157265	241 bp downstream
Tssr157266	transcription start site region 157266	1000 bp upstream
Tssr157267	transcription start site region 157267	1014 bp upstream
Tssr157268	transcription start site region 157268	1072 bp upstream
Tssr157269	transcription start site region 157269	1669 bp upstream
Tssr157270	transcription start site region 157270	1732 bp upstream
Tssr159956	transcription start site region 159956	1474 bp upstream
Tssr159957	transcription start site region 159957	333 bp upstream
Tssr159958	transcription start site region 159958	206 bp upstream
Tssr159959	transcription start site region 159959	1043 bp downstream
Tssr159960	transcription start site region 159960	1097 bp downstream