rs258330914 SNP Detail

Summary

• ID
  rs258330914
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72887953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCTGTGC TCAGACGCCT
  CTCGGAAGCC TCAGGGGAGG AATGCATTAG TTTGGGGGAT AGTTTCAAGA CTTCATCTAC
  CATCAAGGGG GAGGCAGTGC GAGTGGGTGG TGGATGCTTG TCACATCTCA GTCTGAATCA
  GAAAACAGAC TGGGATGTGG AAGCAGGATG GACCATGACC CTTAAAATGA AAGTCCCACC
  Y
  GCAGTAACTT CCCTTGGCCA GCCGGGCTCC ACAGCCTTCC TCAACAGCGC CAGCACCCAG
  GGAACAAGAG TTCAAGCACA CAAGTCTGTG GGGGGAGCTT TTTACATGCA ACCCACGTTA
  CCACCTACAG AGTTAGGAAA CACCCAGCTA AGTTGTGGAG GCTGGGCTCC TGGCACCTGG
  TGGTCACACG TTAGCTAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350087079	MGP_WTSI_1_72895368	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258330914					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350087079	MGP_WTSI_1_72895368	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72887953 () rs orientation: forward

Symbol	Name	Function Class
Igfbp2	insulin-like growth factor binding protein 2	within coordinates
Tssr7321	transcription start site region 7321	285 bp upstream
Tssr7322	transcription start site region 7322	314 bp upstream
Tssr7323	transcription start site region 7323	357 bp upstream
Tssr7324	transcription start site region 7324	406 bp upstream
Tssr7325	transcription start site region 7325	421 bp upstream
Tssr7326	transcription start site region 7326	451 bp upstream
Tssr7327	transcription start site region 7327	480 bp upstream
Tssr7328	transcription start site region 7328	783 bp upstream
Tssr7329	transcription start site region 7329	818 bp upstream
Tssr7330	transcription start site region 7330	832 bp upstream
Tssr12178	transcription start site region 12178	321 bp downstream
Tssr12179	transcription start site region 12179	364 bp downstream
Tssr12180	transcription start site region 12180	428 bp downstream
Tssr12181	transcription start site region 12181	449 bp downstream
Tssr12182	transcription start site region 12182	492 bp downstream
Tssr12183	transcription start site region 12183	513 bp downstream