rs258331539 SNP Detail

Summary

• ID
  rs258331539
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:42202651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGAGAAAG GGAGCCCCAA
  AGGTCCTTTT CCAGGACCGG CTAGAGCCAG GATTCCGTCC TTTGGCCACC TGCTGCGCTG
  CCTCCTAGCA GCACCCACAG AGGAGACTAT CTTGACTGTC ACCAGGCACC AAGCTCAAGG
  TATAACCCAC GTAGGCGGTG CACCAGATAA CATCAAAGCT TTGGGTAGGG GCCAGAAAAG
  C
  GGGGTAGGGG GGTGTGGGGG GGTGGGGGGG GCAGCGCAGG GAGGGAACCA AGCGCCTCCC
  CCAGCGTTTC CTCTCACGCC CACTTCCAAC CTAGGAGGCT TTTGGTTTCT GCTTTTGTTT
  TTAAAATGAA AAGTTGAACC AGGAAGCTTG GGAGCAGACT TTTTTTTTTT TTTTTTTTTT
  TTTTTTTTTT TGCCTTGTAG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	CE/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J
ss388403576	MGP_WTSI_13_42144544	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	CE/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J
rs258331539					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388403576	MGP_WTSI_13_42144544	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:42202651 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5502	CpG island 5502	244 bp proximal
Gm28707	predicted gene 28707	within coordinates
Gm61288	predicted gene, 61288	within coordinates
Gm61314	predicted gene, 61314	1538 bp downstream
Rr478102	regulatory region 478102	within coordinates
Rr478103	regulatory region 478103	809 bp proximal
Tssr119424	transcription start site region 119424	192 bp upstream
Tssr119425	transcription start site region 119425	420 bp upstream