rs258333480 SNP Detail

Summary

• ID
  rs258333480
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:36918853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTAATGTG CGATCTCAAC
  GAAATCTCGC CTCTCTGTAG TGACTGATTT TCATCCCAGT GGCCACCCCC GCCTCCTCGT
  TCCAGGGGCC CCCAGCCCCG CCCCCTCCCT GCGCAGAATC GGGGCTCCCT CTCCTCTCCC
  CGCCCCGGAG ACGGGGAGTC CTGGTGCGCC CACTCGATTG TTCAACCTGC TCCCTCCTTC
  M
  CTGGCGCCAC AACGAACCCA GACACTTCCA ACCCTGCAGA GAGGTTTGGG GAGCTTTGGG
  CCCAGGGAGG ACAGAGGGGA GAGACTCCTC CGGTCCGAAT CACCCTTCTC TCGCCCTCAG
  TGGGGTGCAG ACCCCCTCAC TTGCCTACCC TAGTTTTCTC TCCAGCCCCA CAGTTGAGCT
  CTAGGCGCAG CCTAGAGCGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388276798	MGP_WTSI_13_36826748	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258333480					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388276798	MGP_WTSI_13_36826748	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:36918853 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5451	CpG island 5451	within coordinates
Cpgi5452	CpG island 5452	1036 bp proximal
Gm56572	predicted gene, 56572	9 bp upstream
Nrn1	neuritin 1	Intron
Rr477394	regulatory region 477394	413 bp distal
Rr477395	regulatory region 477395	within coordinates
Rr477396	regulatory region 477396	20 bp proximal
Tssr119271	transcription start site region 119271	12 bp downstream
Tssr122097	transcription start site region 122097	604 bp upstream
Tssr122098	transcription start site region 122098	571 bp upstream
Tssr122099	transcription start site region 122099	494 bp upstream
Tssr122100	transcription start site region 122100	464 bp upstream
Tssr122101	transcription start site region 122101	432 bp upstream
Tssr122102	transcription start site region 122102	387 bp upstream