rs258341153 SNP Detail

Summary

• ID
  rs258341153
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:82960082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGTACACT GTAGCTGTCT
  TCAGACTCAC CAGAAGAGGG CGTCAGATTT CATTAAGGGT GGTTATGAGC CACCATGTGG
  TTGCTGGGAC TGGAACTCAA GACCTTCAGA AGAGCAGTCA GTGCTCTTAC CTGCTGAGCC
  ATCTCACCAG CCCCCTTTGC TCTTATTCTA ACGGCTCTGT CTGTTTTCCA GGAATGACAT
  W
  CAGCTGGAAA ATGCAAAGGC TGCTGGGAAA ATGGGCATCA GTGTTGATCT GGAAGCCAAA
  TATGCTAAGC TGGGTCTAAA TCTCGGAGCA ATCACTTTTG GAGAGAAGGA TAGGAAGAAA
  ATGAAGAATT CTCACCTCAG AAAACAGGAG AATGCAAACA TCTCTCTAGC TGTATGTGCT
  CTCCTGAATT CGGGAGGTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323766750	CHEV_11_82882758	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258341153					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:82960082 () rs orientation: forward

Symbol	Name	Function Class
D11Pas76	DNA segment, Chr 11, Pasteur Institute 76	996 bp distal
Gm20234	predicted gene, 20234	1269 bp upstream
Rr452896	regulatory region 452896	1671 bp distal
Rr452897	regulatory region 452897	742 bp distal
Rr452898	regulatory region 452898	154 bp distal
Slfn2	schlafen 2	within coordinates
Tssr103642	transcription start site region 103642	836 bp downstream
Tssr103643	transcription start site region 103643	22 bp upstream
Tssr103644	transcription start site region 103644	71 bp upstream
Tssr103645	transcription start site region 103645	252 bp upstream
Tssr103646	transcription start site region 103646	321 bp upstream
Tssr103647	transcription start site region 103647	490 bp upstream
Tssr103648	transcription start site region 103648	560 bp upstream
Tssr103649	transcription start site region 103649	605 bp upstream
Tssr109640	transcription start site region 109640	1965 bp upstream