rs258343344 SNP Detail

Summary

• ID
  rs258343344
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:123622988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATATGGGT GCTCTGTCTT
  GGTCCCTTTT CTAGCCACCT GCCTATCATT CCCTTTTATT GTTTCATGCT GACCATTCCT
  GAGATCACAC CCTTGAGCCT GCAGCTGAGC CTCAGTACTG CCTGAAGCAA CTGGGGAGCT
  CAAGATGGCA AAGGCTGCTC CTGTGACATA CAACAAAGCC TAGAGGGTTT GTCCTTTTTT
  K
  GTCTCATTTT TTCTTTTATA TTCAGGTGCC CTTGGCTTTT CCTGGACTTC TCAAAGTCCT
  TCTATGGTGG GTGTGACATT AGGAATCAAT CTGAGAGAGG TGAGCACAAC TAGGATGAGG
  CTAGCTTAAA GCCAGGTGCT TGGTGCAGCT CCGGCACCTC CATTAGCCAT GTGACCTAGA
  GCATCACTAT TCTACCATTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323234357	CHEV_9_123703041	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258343344					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123622988 () rs orientation: forward

Symbol	Name	Function Class
Fyco1	FYVE and coiled-coil domain containing 1	within coordinates
Tssr92157	transcription start site region 92157	1857 bp upstream
Tssr92158	transcription start site region 92158	1851 bp upstream
Tssr92159	transcription start site region 92159	1827 bp upstream
Tssr92160	transcription start site region 92160	1452 bp upstream
Tssr92161	transcription start site region 92161	1431 bp upstream
Tssr92162	transcription start site region 92162	902 bp downstream