rs258343398 SNP Detail

Summary

• ID
  rs258343398
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113877017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGTCCCA TGGTGTGACA
  TAATGCTGCA TGTGAAATAC ACGCATGTAC TCAAAACCAG TGTTGCAGTG AAGTCATGTG
  ATACAACACA GGCAATAACC ATCGCAAACA CCTTGTATTA ATTTTACATT TGATTTGGAA
  TTCAATTTTG GTCATAGTGA ATTCATGAGC CATATAATGT TTTTTGTTTT GTTTTGTTTA
  W
  AAAAAAAAAC TGATGGTTAC CAGTATATAT GCGGTATGAC AAGTCAACAC CTGGCAAGTC
  AACCTTCTCA TTGCTTTCAT TGGCTTCGAG TCACACTACA GGCTGGAGAG CTGTCTCAGT
  GGCTAATATC CTTAATATCC CTATAGATGA ACCTGGTTTG ATTCCTAGCA CCTATATGGT
  GGCTCAAAAC CATCCAGTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355315474	MGP_WTSI_2_113872272	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258343398					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355315474	MGP_WTSI_2_113872272	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113877017 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	746 bp downstream
Rr562815	regulatory region 562815	826 bp distal
Rr562816	regulatory region 562816	within coordinates
Tssr600	transcription start site region 600	1026 bp downstream
Tssr601	transcription start site region 601	1036 bp downstream
Tssr19429	transcription start site region 19429	748 bp upstream
Tssr19430	transcription start site region 19430	843 bp upstream
Tssr19431	transcription start site region 19431	923 bp upstream
Tssr19432	transcription start site region 19432	1019 bp upstream
Tssr19433	transcription start site region 19433	1585 bp upstream
Tssr19434	transcription start site region 19434	1638 bp upstream
Tssr25660	transcription start site region 25660	775 bp downstream
Tssr25661	transcription start site region 25661	792 bp downstream
Tssr25662	transcription start site region 25662	849 bp downstream
Tssr25663	transcription start site region 25663	912 bp downstream
Tssr25664	transcription start site region 25664	942 bp downstream
Tssr25665	transcription start site region 25665	1050 bp downstream
Tssr25666	transcription start site region 25666	1617 bp downstream
Tssr25667	transcription start site region 25667	1644 bp downstream
Tssr25668	transcription start site region 25668	1680 bp downstream
Tssr25669	transcription start site region 25669	1709 bp downstream