rs258346155 SNP Detail

Summary

• ID
  rs258346155
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148992291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTGTTGT ATATTCTTAG
  ATATTTATAA AATTCTCAAT AGCTGGGTGG AGAGATGGTT CTGTGGTTCA AAGCACCGGC
  TGCTCTTGCA GAAGACCTGG GTTCAATCCC CAGCAACCAC ATGGCAGCTT GCATGCATAT
  ATATATGTGT GCATAGACAT AAAATGTACA TACAAGTATA TCTTAAGTCA AAATAATTAA
  R
  CTGTTTTCAA TAGCATCCTC ACTACTAAGT GTGGCTTCCA TTTGAATGTG GCACTGTCCA
  TACTTTCCAG CCCTGGCCCT GGTCCAGCTG CCCACTCTGC TAGTGTTCTA GACTAGGGTT
  ACTTATGGCC CACAAAGAAG CAAGAGAGAA ATGGCCCCAC ACAAGGTTTG CATTGAGCAG
  GGCAGGAAGT AATGGGCACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321720091	CHEV_5_149867057	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258346155					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148992291 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17090	CpG island 17090	1822 bp distal
D5Mit287	DNA segment, Chr 5, Massachusetts Institute of Technology 287	1474 bp distal
Rr124812	regulatory region 124812	1290 bp distal