rs258352922 SNP Detail

Summary

• ID
  rs258352922
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45108691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACCCCCGC TTCTTACCTG
  CACATCCTGG AAGAGTGCAC GGCCCCCGCG ATCGTTCTGA AACTCGAGGA GACGCTCCGC
  GCCCTCGCGC TTCTCCTCGG CCAATTCGCG GAAGAAGTGG CCTACGCCCT CCAGAGCCAC
  GTCATCCCGA TCAAAAAAGA AGCCCTGCGG GAGGTTACAA ATACGAGTTA ACGGAACGCG
  R
  TGGCTCGGCT CACACTGTAA ACTTCAATCG CAACACTCAA GAGGTAGAGG CAGTACGTGT
  GAGATTTCGA GGGCAGCCCG GTCTGCCCAG CGAGTTCCAG TCAGACAAAA CTACTATGTA
  CACAGCGCGC AGGGAGAGGG AGAGGTCGGA GCACAGTCTC TGCCCTGCAT GGAACAAAGA
  AGGCCCGCGC ATGCGCAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371177618	MGP_WTSI_7_52714637	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258352922					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371177618	MGP_WTSI_7_52714637	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45108691 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19060	CpG island 19060			within coordinates
Cpgi19061	CpG island 19061			557 bp proximal
Ftl1	ferritin light polypeptide 1			Intron
				Noncoding-Transcript-Variant
Gm10252	predicted gene 10252			202 bp upstream
Gm56125	predicted gene, 56125			1070 bp upstream
Gm73429	predicted gene, 73429			915 bp downstream
Gm73431	predicted gene, 73431			1742 bp upstream
Rr380754	regulatory region 380754			68 bp upstream
Rr646449	regulatory region 646449			1308 bp distal
Rr646450	regulatory region 646450			374 bp proximal
Rr646451	regulatory region 646451			821 bp proximal
Rr646452	regulatory region 646452			1252 bp proximal
Rr646453	regulatory region 646453			1753 bp proximal
Tssr66539	transcription start site region 66539			1181 bp downstream
Tssr66540	transcription start site region 66540			1077 bp downstream
Tssr66541	transcription start site region 66541			394 bp upstream
Tssr66542	transcription start site region 66542			1797 bp upstream
Tssr72390	transcription start site region 72390			1065 bp upstream
Tssr72391	transcription start site region 72391			1043 bp upstream
Tssr72392	transcription start site region 72392			919 bp upstream
Tssr72393	transcription start site region 72393			854 bp upstream
Tssr72394	transcription start site region 72394			708 bp upstream
Tssr72395	transcription start site region 72395			132 bp downstream
Tssr72396	transcription start site region 72396			164 bp downstream
Tssr72397	transcription start site region 72397			421 bp downstream
Tssr72398	transcription start site region 72398			572 bp downstream
Tssr72399	transcription start site region 72399			1655 bp downstream
Tssr72400	transcription start site region 72400			1693 bp downstream