rs258353997 SNP Detail

Summary

• ID
  rs258353997
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79894412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGGCCTC CTCTGGCACT
  GTGCACATAT GGTGCACAGA TGTGCACTCA GGCACACATA AAATAAAAAG ATTTGAAGAA
  TAAAACAGGC TGGAGAGATG TCTCACTGGC TAAGGGCCCT TGGTGCACTC GCAGAGGACC
  TAGGTTCCGT TCCCATCAGT CCCAAAGGTG GCTCACAGCC ATGTATAACT CCAGTCCCAA
  R
  GGATCTGACA TTCTCTTCTG ACTTACACAG GCACCAAACA AGAATGCGGT AAAAACTTAT
  ACACATAAAA TACAAACATT TGTGAATTTT TAAGAATGAA AAACCTTTTG TTACTGTGTA
  ACCGGTTACT TTACCAAATT CTCAGTACTA CAGAGTAAGC AGATATTCAT ATCCTTGTAC
  TATAGGCTTA GATTTTTCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372041249	MGP_WTSI_7_87389550	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258353997					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372041249	MGP_WTSI_7_87389550	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79894412 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19326	CpG island 19326	1450 bp proximal
Gm73873	predicted gene, 73873	79 bp downstream
Rr158192	regulatory region 158192	1412 bp distal
Rr165873	regulatory region 165873	189 bp proximal
Rr168083	regulatory region 168083	1188 bp proximal
Rr400401	regulatory region 400401	1531 bp upstream
Tssr2310	transcription start site region 2310	1695 bp upstream
Tssr67422	transcription start site region 67422	1705 bp upstream
Tssr67423	transcription start site region 67423	1711 bp upstream
Tssr67424	transcription start site region 67424	1766 bp upstream
Tssr67425	transcription start site region 67425	1783 bp upstream
Tssr67426	transcription start site region 67426	1842 bp upstream
Tssr67427	transcription start site region 67427	1865 bp upstream
Ttll13	tubulin tyrosine ligase-like family, member 13	1712 bp upstream