rs258355623 SNP Detail

Summary

• ID
  rs258355623
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:119011193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTTTCGA GGCGACTCCT
  AGGGATTGTG CTTGCCCCGT AGCCCAGTGC CTTAGCCGGG AGGAGGGGGG GCGGGAAGAG
  CCATTCGGTT CAGCCGGCAG CCGGGCTGGG AGAGGCCGGA GCTGGCATCA CTGACTTCCC
  GGGGCGCTCG TCCTCTCTTC GCCCAGCTCG GCTGGCGAGC TGCAAGGCGC CTCCCGCCAG
  Y
  GGATCTCCGC AGCCCGGCTG CTGCTGTCTT TCAAAGCAAG GCGCCCGCCG CTCCGGCTTT
  GGGGTCTTCC GGCTCTCCAG CTCCGGGCTG AAAGGGGCCT GAGCACGATC CCCGGTCTCC
  TCTGCATAGC GCAGGCCCAC TACCCCCAGC CCCTTGGGCC CCCATTGTCC AGACAGCTGG
  AGCTCCTGCC CGAGCCCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376216093	MGP_WTSI_8_120808354	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258355623					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376216093	MGP_WTSI_8_120808354	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:119011193 () rs orientation: forward

Symbol	Name	Function Class
Cdh13	cadherin 13	within coordinates
Cpgi21109	CpG island 21109	within coordinates
Rr382714	regulatory region 382714	1167 bp upstream
Rr670996	regulatory region 670996	711 bp distal
Rr670997	regulatory region 670997	within coordinates
Rr670998	regulatory region 670998	1239 bp proximal
Rr670999	regulatory region 670999	1621 bp proximal
Tssr79649	transcription start site region 79649	852 bp downstream
Tssr79650	transcription start site region 79650	836 bp downstream
Tssr79651	transcription start site region 79651	821 bp downstream
Tssr79652	transcription start site region 79652	790 bp downstream
Tssr79653	transcription start site region 79653	716 bp downstream
Tssr79654	transcription start site region 79654	687 bp downstream
Tssr79655	transcription start site region 79655	651 bp downstream