rs258358591 SNP Detail

Summary

• ID
  rs258358591
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130122000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGCAGACA AGGGAGTACA
  GGAGGCCGAG CAGGCAGCAG GATGGGGAGA AGAGCATATC ACAAAGGATG AGATGAGGTT
  ACCTTGCAAG AAATGAGACC AGCTGGGAGG GAAAGCAGGC AGCTAACCCT GCCTGTAATC
  TCCACCCCGA CAAAGCTGCA AGGTCTGTAA TCAGATGGCC CAAGAAGGGC AAAGGATGGT
  K
  TGGGAAAAGT AACAGCAGAT GGAACTAAGG TGAAGAAGAC CAAGAGGATG AAACAGCCAA
  GAGAGGGGAA GTGAAGAACA GCCCCGAGGT CACAAAGGAG GTATTGTTGG GGCCTGGAGG
  AGAGAGGTCC CTCAGGTCCC AGCAACAGCA GTGCCGAGCC CCTGAAGCCT TTTGAAACTC
  ACCTTGCCAG CTTTGATCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355659045	MGP_WTSI_2_130105816	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	G	G	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	G	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	G	G	T	T	T	T	G	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258358591					SNP	T	T	T	T	T	T	G	G	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	G	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	G	G	T	T	T	T	G	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355659045	MGP_WTSI_2_130105816	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130122000 () rs orientation: forward

Symbol	Name	Function Class
Idh3b	isocitrate dehydrogenase 3 (NAD+) beta	within coordinates
Nop56	NOP56 ribonucleoprotein	767 bp downstream
Snord57	small nucleolar RNA, C/D box 57	1992 bp downstream
Tssr26286	transcription start site region 26286	706 bp upstream
Tssr26287	transcription start site region 26287	657 bp upstream
Tssr26288	transcription start site region 26288	588 bp upstream
Tssr26289	transcription start site region 26289	428 bp upstream