rs258362556 SNP Detail

Summary

• ID
  rs258362556
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:32904635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGAAATC AACATTCTAT
  CAAATGAACT TCATTCATGT CTATGTAGTC AACTCAGCAA TGGCCAAGTG GGACTTAGTC
  TTTCATGCTA GACTAAAGGG TACATCTACA GCCCCTCTGA CCACACTGAA TTTCACTCCC
  CTGATTTCAT AACCTGATTG GAACTAGATG ACATCCTGTT AAGAGGACTT AGGGACGGGT
  R
  GATCACAAAG CTGAAAAATC ACTGACATTG TTTAGACACA GTGCCACACA CCTGTCCTCT
  TCACCTGGAT CAAGCACAAG CAAGCCTTAT GTGACAAGCT CAGGGATGAC GCTATGGCAG
  AGGCAAGCAG ACTTTCTAGC AGACTAGAGG GCTATCCTGT GAGACTTTCA TGATATTATT
  CCACACCCAC ACCACACCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364466313	MGP_WTSI_5_33089940	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258362556					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364466313	MGP_WTSI_5_33089940	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:32904635 () rs orientation: forward

Symbol	Name	Function Class
Gm71279	predicted gene, 71279	248 bp downstream
Pisd	phosphatidylserine decarboxylase	within coordinates
Rr609420	regulatory region 609420	990 bp distal
Rr609421	regulatory region 609421	797 bp distal
Rr609422	regulatory region 609422	410 bp distal
Rr609423	regulatory region 609423	302 bp proximal
Rr609424	regulatory region 609424	540 bp proximal
Rr609425	regulatory region 609425	804 bp proximal
Rr609426	regulatory region 609426	1692 bp proximal
Tssr45794	transcription start site region 45794	1167 bp downstream
Tssr45795	transcription start site region 45795	742 bp downstream
Tssr50589	transcription start site region 50589	978 bp upstream
Tssr50590	transcription start site region 50590	950 bp upstream
Tssr50591	transcription start site region 50591	939 bp upstream