rs258363179 SNP Detail

Summary

• ID
  rs258363179
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:28450869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGTTGTG GGACACTGAA
  AGGGGCAGAC AGGGACTTCA GACACCAACA GGTCCTCTCC CCAGACAGCT CAGTAGCCCT
  GTTGGAGCAG GTACTCAGGC AGGGCTGTGA GGATCAGCAG TTGGCACCCC CTCCTCGCCT
  CAGTGCTGAT TTCAGGGCTG TTGAGCTTGA CGACACCAAA TGGATCCTAG ACCAGGGCTT
  R
  AAGTTCTGGG GTGGGGGTGG GGTGGGGTTC TCTGGGAAAC TGGGATCCAT ACCCTGCTTC
  CTGCCCTGGG GCACCCAGAT ATTGAGGTAG AGGCAGTCTT CTTGCCCATA GGTGTTGTCC
  TGGGTGATGG TGGCCTGTAG GCATCGTTTC TTGAAGTTTG TAGCCTTCAG CGTCCCTACA
  GTGAGAGAAG GGCAAGGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353478970	MGP_WTSI_2_28416377	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258363179					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353478970	MGP_WTSI_2_28416377	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28450869 () rs orientation: forward

Symbol	Name	Function Class
Cel	carboxyl ester lipase	within coordinates
Gm13381	predicted gene 13381	1340 bp upstream
Rr553836	regulatory region 553836	70 bp distal
Tssr16963	transcription start site region 16963	258 bp downstream
Tssr16964	transcription start site region 16964	91 bp upstream
Tssr16965	transcription start site region 16965	1652 bp upstream
Tssr23262	transcription start site region 23262	1462 bp upstream
Tssr23263	transcription start site region 23263	1420 bp upstream
Tssr23264	transcription start site region 23264	1218 bp upstream
Tssr23265	transcription start site region 23265	1176 bp upstream
Tssr23266	transcription start site region 23266	995 bp upstream
Tssr23267	transcription start site region 23267	965 bp upstream
Tssr23268	transcription start site region 23268	282 bp upstream
Tssr23269	transcription start site region 23269	250 bp upstream
Tssr23270	transcription start site region 23270	178 bp upstream
Tssr23271	transcription start site region 23271	323 bp downstream
Tssr23272	transcription start site region 23272	347 bp downstream
Tssr23273	transcription start site region 23273	377 bp downstream
Tssr23274	transcription start site region 23274	407 bp downstream
Tssr23275	transcription start site region 23275	471 bp downstream
Tssr23276	transcription start site region 23276	1554 bp downstream
Tssr23277	transcription start site region 23277	1576 bp downstream