rs258366680 SNP Detail

Summary

• ID
  rs258366680
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:98621064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    acctggaag tgtggcctaa gcttcgagca
  gatgtggatc tccatcctta AACCAACAAA CACTATCATG TTAGCTACAA CATTTTCCAA
  GCTTTCATCT TGATGTCATA TTTTATACTT TCTTGAGGTG TTTTATGGTT TAAAATGCAC
  R
  ATAGAAACTA TTTAAATGTC TTACACTGAT TCACTATTTA CTAGTGATCT GAACTGACGA
  TCACTGACCA CGACTAAGTT CGGAGGTTAT CAGATGGACA TGGCTCCCTG tttttttttt
  ttgttttttg ttttttggtt tttttttttt                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319867643	CHEV_1_100589916	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258366680					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:98621064 () rs orientation: forward

Symbol	Name	Function Class
Tssr8238	transcription start site region 8238	137 bp upstream