rs258367844 SNP Detail

Summary

• ID
  rs258367844
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:91733491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGTACAG AGCCAGCTTG
  GTAGTGACCT CAGATGATTT CCAAGCCACT GCATTGGCTG TTGGACAGGC GTTTGCCCCC
  AGGGGACGGC AGAGGGAAGG CGAAGGGAAG TTTCGGTCAG TTGAAGCTAT CTCCACAGAA
  GTGAGGTCAG TACTCCAGAG CTGCCCAATG TCAGCTTCTG AACCAGGAGA GGGCACTACA
  Y
  CTTCACCCCA GCCTCCACTG GGCCCAACTG TGCCATCCTG AACTTCTTTG ACAAATGTAC
  ACATTTTTTC CTGTCTCCAA AGCAATGTAC TCTGCCAAGT GACCCTCTAA TCCTCTTCCA
  GTGGCTGTTG ACTCAGCCAC CCATGATTGT ACTGTGTTCC TGTTGTCCTG TGTATTTCTG
  GTTGCTCTCG TGTTATTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369190307	MGP_WTSI_6_91706504	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258367844					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369190307	MGP_WTSI_6_91706504	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:91733491 () rs orientation: forward

Symbol	Name	Function Class
Rr379752	regulatory region 379752	within coordinates
Slc6a6	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	within coordinates
Tssr1939	transcription start site region 1939	607 bp upstream
Tssr57746	transcription start site region 57746	1530 bp downstream
Tssr57747	transcription start site region 57747	1336 bp downstream
Tssr57748	transcription start site region 57748	493 bp downstream
Tssr57749	transcription start site region 57749	353 bp downstream
Tssr57750	transcription start site region 57750	within coordinates
Tssr57751	transcription start site region 57751	84 bp upstream
Tssr57752	transcription start site region 57752	473 bp upstream
Tssr57753	transcription start site region 57753	1309 bp upstream
Tssr57754	transcription start site region 57754	1408 bp upstream
Tssr57755	transcription start site region 57755	1499 bp upstream
Tssr57756	transcription start site region 57756	1532 bp upstream
Tssr57757	transcription start site region 57757	1569 bp upstream
Tssr57758	transcription start site region 57758	1600 bp upstream
Tssr57759	transcription start site region 57759	1825 bp upstream
Tssr57760	transcription start site region 57760	1881 bp upstream
Tssr57761	transcription start site region 57761	1898 bp upstream
Tssr57762	transcription start site region 57762	1926 bp upstream
Tssr57763	transcription start site region 57763	1953 bp upstream
Tssr57764	transcription start site region 57764	1978 bp upstream
Tssr62094	transcription start site region 62094	1273 bp upstream
Tssr62095	transcription start site region 62095	1816 bp downstream