rs258372000 SNP Detail

Summary

• ID
  rs258372000
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:78715496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATAAAAA AAAGAAATTC
  CACTGACCTG TAAATATCAT GCAGCCTGAC ACCAGGGCGC CCAGCTGCCA ATCTCAGTGT
  GGAAGAAAAT GACAAGATGA GAATGGGTGG GTTTCCATTA GGTTACAGAC TTGGTGCTAT
  TTCAGTGAAT GCTTGGACTG GTAAGAATTC TTTAGTTTTA CTACTGAAAT GAAAAGAAAT
  C
  TAAAGTTTCT GTCAAGTTAA AAAGAATCAC TATTTCCTTA TTCTTTTTTT GTTTTTTATT
  TTCTTCCTTC CTTTCTTCTT TCTTTTGTTT TGTTTTGTTT TATTTGTGTT TTTTTTTTTT
  TTTTTTTTTT TGCTTTTACA AGACAAAACA GCCCTGTTTC TCTGTGTAAC AGCCCTGGGT
  GTCCTGGAAC TCGATTTGTA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323757664	CHEV_11_78638172	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258372000					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:78715496 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3360	CpG island 3360	1759 bp proximal
D11Bhm78	DNA segment, Chr 11, Boehm 78	1104 bp distal
D11Bhm79	DNA segment, Chr 11, Boehm 79	92 bp distal
Gm23219	predicted gene, 23219	197 bp downstream
Lyrm9	LYR motif containing 9	1925 bp upstream
Tssr103332	transcription start site region 103332	1905 bp upstream