rs258382509 SNP Detail

Summary

• ID
  rs258382509
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156976251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACCAACC AAGAAAAAAA
  AAAAAAAAAA AAAAAAAAAA AGTTGAGCAG ATTCAAAGTG TTGACGGGAG CAAGACCAAG
  AACCAGAAGC ATCCCTTAAA ATTCTTAAAA TTCTTGAGTG GCCAAGTTGT GGAATGTTGG
  GGTTTCAGTG AATAACTTGC TCTTATGTTG GAAGAGAAAT TCCCTTAGTA GCACTCTGCA
  W
  ATACAATGAG CACATACTGA ACCCTACTAG GCTATTATGA TAGTCAGTGA GAATCCAGAG
  ATTAAGCACC TTCCCTCCCC TTTAAGGAAA ACCCCAAATT CCGGGACCAG CTTCAGAGTT
  AAACTTAAAA GCGCTCAAAA TCTCTCATGG GGCCAAGTGT TCCGGGAGCT GCGGTTAGCA
  CAAAAGGGTC TCCCAAGCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356252297	MGP_WTSI_2_156960067	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258382509					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356252297	MGP_WTSI_2_156960067	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156976251 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12569	CpG island 12569	220 bp proximal
Rr397438	regulatory region 397438	715 bp upstream
Rr568443	regulatory region 568443	865 bp proximal
Samhd1	SAM domain and HD domain, 1	within coordinates
Tssr21224	transcription start site region 21224	153 bp upstream
Tssr21225	transcription start site region 21225	1470 bp upstream
Tssr27158	transcription start site region 27158	357 bp upstream
Tssr27159	transcription start site region 27159	188 bp upstream
Tssr27160	transcription start site region 27160	754 bp downstream
Tssr27161	transcription start site region 27161	781 bp downstream
Tssr27162	transcription start site region 27162	869 bp downstream