rs258407177 SNP Detail

Summary

• ID
  rs258407177
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128769438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTACAGCCT ACGAGGTGTG
  CTGTGAGTCT CCAGGGGAGG CGAAGTCAGT AAAGGACCAC TCTAGATCAG GGCCCAGGAA
  CTTTCCGGTC CTCTGTTTTT ATCAGCATAT CTGTCTTCTC AGCCTCATCT CAATTCTCTG
  TGATTCTTCT TTTTACTGTA CTCTTTCTCT CCGCATTTCT GGGCTCAACC TCCACTTTTT
  K
  GGGGGAAGGG TGGGTGAAGG AATGAGTGCA CAGTGCAAAG GTGGGGCGGC AGGGCGCAAG
  GCAATGGGTG CGGCGGGTGC TAGACCTGAG CCGCGGGTCT GGGCATCCCC GGACCCTGGG
  TCTTGCGCCT GAGTCTATCT GCTGCTGGGG GCATGGGGCG GGAAGGGGCG GGGTCTGGGG
  CGGTGTCCCA GAGAGGAGGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323536809	CHEV_10_128370625	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258407177					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128769438 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2425	CpG island 2425	182 bp proximal
Itga7	integrin alpha 7	207 bp upstream
Rr441373	regulatory region 441373	1762 bp distal
Rr441374	regulatory region 441374	within coordinates
Rr441375	regulatory region 441375	1749 bp proximal
Tssr96480	transcription start site region 96480	182 bp upstream
Tssr96481	transcription start site region 96481	207 bp upstream
Tssr96482	transcription start site region 96482	213 bp upstream