rs258413365 SNP Detail

Summary

• ID
  rs258413365
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:91855064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGCTCGCCT AGCACCCGGG
  AAGGGAGGGT GGGCGGGGAG GCCTGGAAAG TTCCACCGGG TTCCAGAGCC CAAGGTTGGT
  AGGCGCGGAG GCGGCGGGGA GCGGGTGCGT GCCGAGCGAG GAGACGGCCT CCGACGGGCT
  GCTCGAGACC GTGTCCACGC TCCGCAGGCT CGGGGGACAC AGACACGGCC CGGGAGGGCA
  R
  GCAGGAAGCC GTTGAGGTGC AAGTGCAAGG CGCCCTCCGG GAGAGGGGCG GGGCGGTGCC
  GGGTGGGCGG GGCTCTCGGT GGGCGGGGCG AGCCGTCTGC GCAGCTGCCG GAGCCTTTAA
  ACCCGGCCTC GCGGGGTCGC ACGGTGCTTT CGCCGTCCGG GAGCTGACCG GCCGTGTTCC
  TCTCTCGTCT TCCTCTGCGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397337298	MGP_WTSI_16_92058421	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258413365					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397337298	MGP_WTSI_16_92058421	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:91855064 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8465	CpG island 8465	within coordinates
Gm49711	predicted gene, 49711	140 bp upstream
Mrps6	mitochondrial ribosomal protein S6	160 bp upstream
Rr519574	regulatory region 519574	within coordinates
Rr519575	regulatory region 519575	157 bp proximal
Slc5a3	solute carrier family 5 (inositol transporters), member 3	146 bp upstream
Tssr139459	transcription start site region 139459	90 bp downstream
Tssr139460	transcription start site region 139460	137 bp upstream
Tssr139461	transcription start site region 139461	1974 bp upstream