rs258413704 SNP Detail

Summary

• ID
  rs258413704
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72893628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGACCGCA ACCAGCTGGG
  GTGTTTTCCT TAAGGGTGAA CCATCATGCA CTGCCCTCTC CCACTTTTGC TTTATTGGCT
  GTATGGGGCT GCTTGTCCCT AGAAAGGGCA ACCAGTTGGT TATTCTCAGT TAGGGGTGCT
  ATGAGACCTT TCCAGCAAGG TCACATAATG TTTGAAATGT CAGCACTAAC TATCTTAAAG
  W
  CCCAATATTT TTTCTTTCGC CTTTTTTTTT TTTTTTTGGA GTGGGTGGAT TGGGTTTTTT
  TGGTTTGTTT GTTTTTGTTT TTTGAGGTAG GGTTTCTCTG TGTATCTCCA CCTATCCTAA
  AACTTGCACT GTAGTCCAAG CTGACCTCCA ACTCAGAAAT CCGTTTGCCT CTGCCTTCTG
  AGTCCACCGA CTAACTTTAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378030006	MGP_WTSI_9_72834153	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258413704					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378030006	MGP_WTSI_9_72834153	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72893628 () rs orientation: forward

Symbol	Name	Function Class
Ccpg1	cell cycle progression 1	within coordinates
Cpgi22024	CpG island 22024	169 bp distal
Gm44503	predicted readthrough transcript (NMD candidate), 44503	within coordinates
Pierce2	piercer of microtubule wall 2	970 bp upstream
Rr401512	regulatory region 401512	724 bp downstream
Rr682884	regulatory region 682884	988 bp distal
Rr682885	regulatory region 682885	731 bp distal
Rr682886	regulatory region 682886	62 bp distal
Rr682887	regulatory region 682887	545 bp distal
Tssr2935	transcription start site region 2935	1031 bp upstream
Tssr86066	transcription start site region 86066	940 bp downstream
Tssr86067	transcription start site region 86067	922 bp downstream
Tssr86068	transcription start site region 86068	779 bp downstream
Tssr86069	transcription start site region 86069	704 bp downstream
Tssr90501	transcription start site region 90501	1049 bp upstream
Tssr90502	transcription start site region 90502	1004 bp upstream
Tssr90503	transcription start site region 90503	949 bp upstream