rs258417922 SNP Detail

Summary

• ID
  rs258417922
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25401784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCCTAGGTG CTGTGAGGTC CTTGCTAGGA
  AACTGGTGTA GCAGTGTGGG GTTCTGTGAT GGAACAGGTG GGGTGGGGCC CAGGGAGGAG
  GACCTTGGTA GACAGGTGCC TCTGTTGACA CAGCAGCTCT TAGTCAGGGT CCTGGGTTGG
  R
  CCTCTTAGTG TATGGGGCGG GGGGAACCTC ACAGGTGTTG CTGGGCTCCC GACATCTCTA
  TCATTGCTCC TGCTCTAACT CAGTGAGAGT GCCTTGAGGA AGAACAGAGT GGAGTGTGAG
  GCTTTTCCCG TTAGTAAGTG GCTCCCGGTC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325336536	CHEV_17_25319755	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258417922					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25401784 () rs orientation: forward

Symbol	Name	Function Class
4930568E02Rik	RIKEN cDNA 4930568E02 gene	803 bp downstream
Cpgi8755	CpG island 8755	1193 bp proximal
Rr370183	regulatory region 370183	1530 bp upstream
Rr523507	regulatory region 523507	490 bp proximal
Rr523508	regulatory region 523508	597 bp proximal
Rr523509	regulatory region 523509	1254 bp proximal
Tssr5037	transcription start site region 5037	1748 bp upstream
Tssr143142	transcription start site region 143142	1754 bp upstream
Tssr143143	transcription start site region 143143	1800 bp upstream
Tssr146818	transcription start site region 146818	1572 bp downstream
Tssr146819	transcription start site region 146819	1594 bp downstream
Uqcc4	ubiquinol-cytochrome c reductase complex assembly factor 4	1751 bp upstream