rs258418948 SNP Detail

Summary

• ID
  rs258418948
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72426401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATCTAGCT AATAAGGGTT
  GCATTTTAAG GAATTTTGAG ACTGAGATGA AATGTAAGGA TTTTGAAAAA TAAGCCAAAA
  AGCTATCACA GAGTATCTTC AAAATACCTT TTTTTTTTTT TAAATGAGTT TCTTTCCAGG
  ACCAGATAGT GGAAAGGGTC TTGGTGGCAG GCCATCCCCT GTGATGTCAG AGCCTTGCCA
  K
  GCCCCAGAGG GGCTGTAAGC ATTTGAGTTG AACTCTGCTG AAGGGCACTG ATAGGACACA
  CAAGCAGCTT TCAAACCTGT TTTCAGAGCT ACATGGACCC ACTGAAATAT CAGCATTGAA
  CATCAGGGTA TTGTCATGTG TGTGGGCTTT TGTCATTCTG AAGCTTATTT TTGCCAACTT
  TTCAGACTGG AATGATAAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320343243	CHEV_2_72434114	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258418948					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72426401 () rs orientation: forward

Symbol	Name	Function Class
Rr558998	regulatory region 558998	1612 bp proximal
Tssr18356	transcription start site region 18356	1488 bp upstream