rs258422218 SNP Detail

Summary

• ID
  rs258422218
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151922492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCCCTTG ACTTCACCGT
  GCCAGAGGAC ACTTAAAGGT TTGAAAACTG CTGCTGACTC TCTGTGTGAC TAGATCTTCC
  ACTCCCAATT GACACTGGAG GACCCAGTCC CCAAGGACAT CCCCACTCCA TCAGCTTTAC
  ATCCATAATA GATGATATGG TCCAGGAAGA GCCCTGCATC CCCAGAGTCC AATACTGGTA
  Y
  TCCGGCACAC TGACCTTATC CCACATTTGC TCTGGCTGAT CCACCACCCC GGGGTTTGCC
  TGGCTGCCTC TGCGCCTTCC GGTTCCTTAG TTCCAAGGCA TGGATGCGCT CCTAGATTTG
  GACTGGATTG GGGTGGGGTG GGGGGTCTAC TTAGATCCAT CCAGAGACAA AGGAGCTGAC
  CTGCAAAGAG TTCCAGCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356144197	MGP_WTSI_2_151906308	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258422218					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356144197	MGP_WTSI_2_151906308	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151922492 () rs orientation: forward

Symbol	Name	Function Class
AA387200	expressed sequence AA387200	within coordinates
Cpgi12434	CpG island 12434	250 bp proximal
Cpgi12435	CpG island 12435	933 bp proximal
Gm75114	predicted gene, 75114	within coordinates
Rr567274	regulatory region 567274	208 bp distal
Rr567275	regulatory region 567275	within coordinates
Rr567276	regulatory region 567276	876 bp proximal
Rr567277	regulatory region 567277	968 bp proximal
Scrt2	scratch family zinc finger 2	1245 bp upstream
Tssr20749	transcription start site region 20749	247 bp upstream
Tssr20750	transcription start site region 20750	291 bp upstream
Tssr20751	transcription start site region 20751	326 bp upstream
Tssr20752	transcription start site region 20752	342 bp upstream
Tssr20753	transcription start site region 20753	371 bp upstream
Tssr20754	transcription start site region 20754	393 bp upstream
Tssr20755	transcription start site region 20755	536 bp upstream
Tssr20756	transcription start site region 20756	660 bp upstream
Tssr20757	transcription start site region 20757	802 bp upstream
Tssr20758	transcription start site region 20758	1030 bp upstream
Tssr20759	transcription start site region 20759	1060 bp upstream
Tssr20760	transcription start site region 20760	1238 bp upstream
Tssr20761	transcription start site region 20761	1296 bp upstream