rs258428149 SNP Detail

Summary

• ID
  rs258428149
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:97022550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCCTTGC AGACTACTGT
  TGTATCTCCA GTGTAGCCAT TGCTGCTGCA GCTGCTACTG CTGAGCTCGC ATGCCTGGGT
  TTAGGGTGTG CACACCTATC AAGGCCGAAT AGGGAAACTC TGGAATGGGA GAGGATTTTC
  ATTTCTTTTT TTCTCCTTCT GGGTCTTGAT CAAGATGAAG AAAAACATCT TTTTTTCTTT
  W
  GAGTTGGATT CCCCAAATCA AATCACAGAG AAGAAAGAGA TGGAAAACTC CACTGAGCTG
  GGTGTCCTCC CCCGCCTTAG CCTGAAGGCT TCTAGAAACC TAGTTTCTGA TTAACCAGAG
  CCTAGTCCCA GATTAGACTC GATGACTCGA CAGATCACAC GTGTAGCCTG GACTCCTTCC
  CTCATGGCAA CTCTTTCTGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323116066	CHEV_9_97040916	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258428149					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:97022550 () rs orientation: forward

Symbol	Name	Function Class
Gm57041	predicted gene, 57041	586 bp upstream
Rr685156	regulatory region 685156	within coordinates
Tssr86631	transcription start site region 86631	616 bp upstream