rs258430588 SNP Detail

Summary

• ID
  rs258430588
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:117496775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGTATTTA CATTCACTTG
  ATAATTAGCA AGAGTTTAGG GACTACCTGA TTTCCTCTTA GTATTTATCT ACATCAGGCT
  GAATTTCCCT TTTCTTAAGG GCAAGATCTC CACTCTCCCT ACTCGGCCAC ATTTCCCGTG
  TGCACTTGGC CAAACATCTG CTGTGTGAGA TAGTAACCTT GTCAAGGATC CTTACTTGTC
  M
  TTTTAAAGGT TTTTCAGATC TTTGGCGGTC ATAGGTAAAG AGTGGGTCTC AGCGTCCTAG
  TGCTGAGGGG TTAAAGGCCT TGTTGAAGAT TCACAACCCC TTGGAGTTGA AGGCCTTCCT
  GGAATGGTTT CCACTGAGCA CTCCACAATT CCTACCTCCT GGAATTGTAT AAGCAGTGAT
  TCATGCTGCG CTAAGCCTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387505945	MGP_WTSI_12_118771628	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258430588					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387505945	MGP_WTSI_12_118771628	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:117496775 () rs orientation: forward

Symbol	Name	Function Class
2900082C11Rik	RIKEN cDNA 2900082C11 gene	862 bp downstream
Cpgi5227	CpG island 5227	400 bp proximal
Gm60307	predicted gene, 60307	1909 bp upstream
Rapgef5	Rap guanine nucleotide exchange factor (GEF) 5	within coordinates
Rr474129	regulatory region 474129	25 bp proximal
Rr474130	regulatory region 474130	774 bp proximal
Rr474131	regulatory region 474131	1533 bp proximal
Tssr115537	transcription start site region 115537	702 bp upstream
Tssr115538	transcription start site region 115538	765 bp upstream
Tssr115539	transcription start site region 115539	791 bp upstream