rs258435579 SNP Detail

Summary

• ID
  rs258435579
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70703888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAAGACAT CAACTTCACC
  CATTGTCAAG AGCTTCAACA GGAATGAGTG TTAGAGACAA AGGTCCTGAG ACGCCACCAC
  CAGCTCCCCA GCTCCATCCT ATCTTCCCTT CTAAGGTCTT GGAGGCTTCC CCACAAGCGA
  CCTACCACTG TTGCGGTGCT CCAAACCTCC TCCCCACCTC CTTCTCCTCC TCCTCCCTTT
  M
  CTTGGCTTTT ATCATGCTAA TATTTGCAGA AAATATTCAA TAAAGTGAGT CTTTGCACTT
  GAGATCTCTG TCTTTCTTAC TAAATGGTAG TAATCAGTTG TTTTTCCAGT TACCTGGGTT
  TCTCTTCTAA AGAAGTTAAA TGTTTAGTTG CCCTGAAATC CACCACACTT AAAGGATAAA
  TAAAACCCTC CACTTGCCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321815808	CHEV_6_70676898	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258435579					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70703888 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	within coordinates
Igk	immunoglobulin kappa chain complex	150 bp downstream
Igkc	immunoglobulin kappa constant	150 bp downstream
Rr158	regulatory region 158	953 bp distal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	1469 bp downstream
Rr399685	regulatory region 399685	1057 bp downstream
Rr399686	regulatory region 399686	93 bp downstream
Tssr1880	transcription start site region 1880	53 bp downstream
Tssr56956	transcription start site region 56956	1071 bp downstream
Tssr56957	transcription start site region 56957	432 bp downstream
Tssr56958	transcription start site region 56958	416 bp downstream
Tssr56959	transcription start site region 56959	398 bp downstream
Tssr56960	transcription start site region 56960	383 bp downstream
Tssr56961	transcription start site region 56961	367 bp downstream
Tssr56962	transcription start site region 56962	355 bp downstream
Tssr56963	transcription start site region 56963	308 bp downstream
Tssr56964	transcription start site region 56964	297 bp downstream
Tssr56965	transcription start site region 56965	285 bp downstream
Tssr56966	transcription start site region 56966	277 bp downstream
Tssr56967	transcription start site region 56967	257 bp downstream
Tssr56968	transcription start site region 56968	227 bp downstream
Tssr56969	transcription start site region 56969	203 bp downstream
Tssr56970	transcription start site region 56970	184 bp downstream
Tssr56971	transcription start site region 56971	172 bp downstream
Tssr56972	transcription start site region 56972	113 bp downstream
Tssr56973	transcription start site region 56973	102 bp downstream
Tssr56974	transcription start site region 56974	72 bp downstream
Tssr56975	transcription start site region 56975	35 bp downstream
Tssr61321	transcription start site region 61321	395 bp upstream
Tssr61322	transcription start site region 61322	247 bp upstream
Tssr61323	transcription start site region 61323	166 bp upstream
Tssr61324	transcription start site region 61324	89 bp upstream
Tssr61325	transcription start site region 61325	56 bp upstream
Tssr61326	transcription start site region 61326	43 bp upstream
Tssr61327	transcription start site region 61327	17 bp upstream
Tssr61328	transcription start site region 61328	54 bp downstream