rs258451906 SNP Detail

Summary

• ID
  rs258451906
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:73357868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGAGGCA CTTGGGAAGC
  AGAGGCAGGC AGATCTCTGA GTTTGAGGAG AGCCGGGTCT ACAAAGTGAG TTCTAGGACA
  GGCAGGGCTG TTACACCACA GAGAAAACCT GTCTAAGAAG GGAAGGGGAG GGGGAGGGGG
  AGGGGGAGGG GGAGGGGGAG GGGGAGGGGG AGGGGAGGGA AGGGAAGGGA AGGGAGACAC
  T
  CCTCCCTGCC TGTCCCCTCC TTTGCTGGCT GAAGGGTCAG TCTGCTGCTG CATCTGCCAT
  CTCTCTGCCA TCCTCCATGA CCTGAATCAA ACTCCAGCTG CTTTTTAAAC CTTCTAACAG
  GGACTGGAAG ACCAGCAACT CTATCGGAAT AGTCTAGACC GGCAGTGCTA CATTGGTACT
  TCTGAGGCAT CTGGGTTTGT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394552189	MGP_WTSI_15_73316449	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258451906					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394552189	MGP_WTSI_15_73316449	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:73357868 () rs orientation: forward

Symbol	Name	Function Class
Gm63120	predicted gene, 63120	21 bp upstream
Rr504083	regulatory region 504083	198 bp proximal
Tssr4621	transcription start site region 4621	1803 bp upstream
Tssr4622	transcription start site region 4622	1865 bp upstream
Tssr131529	transcription start site region 131529	1815 bp upstream
Tssr134702	transcription start site region 134702	1249 bp downstream
Tssr134703	transcription start site region 134703	1289 bp downstream
Tssr134704	transcription start site region 134704	1304 bp downstream
Tssr134705	transcription start site region 134705	1316 bp downstream