rs258454745 SNP Detail

Summary

• ID
  rs258454745
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:51445804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTGCTAAG GATCCGTTGA
  CTTTACCAAC AAATTCGAAG ATTCCCTTAA AAATGCTTAT AATTTGAATT ATTTCGATCC
  GAGGATCCTT TAAGCAGATA AAAGTTCTGC AATAAAAGGA AAGTAACCCT GCACTCAACA
  TAGCCTCCCT AGCTTCCTGA TGAGCGCTCC CATTTTTTCC ACTTTGACTT CCTCCTACTA
  Y
  ACTAATGCTC AAGTGCTTTA CTACAGCACC CGTAATCTTA CGTATTATGA AAAATAAAAC
  GGTCTCTTTG CAGCGACGCT GCCTTCAGCC ACCCGCCCAG GCCTCGGTTG TACTACGTTC
  TCTCTGCCTG TTCCAGTAAA GCTCGTGGAG CGCCGCCACC CCGCCCCCAC CCCGCGCCTC
  GGTGGCTTCA GAAAGCAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368292330	MGP_WTSI_6_51418823	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258454745					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368292330	MGP_WTSI_6_51418823	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:51445804 () rs orientation: forward

Symbol	Name	Function Class
Cbx3	chromobox 3	1792 bp upstream
Cpgi17402	CpG island 17402	21 bp proximal
Gm67572	predicted gene, 67572	606 bp upstream
Hnrnpa2b1	heterogeneous nuclear ribonucleoprotein A2/B1	within coordinates
Rr379347	regulatory region 379347	within coordinates
Tssr56443	transcription start site region 56443	604 bp upstream
Tssr56444	transcription start site region 56444	1359 bp upstream
Tssr56445	transcription start site region 56445	1515 bp upstream
Tssr56446	transcription start site region 56446	1581 bp upstream
Tssr56447	transcription start site region 56447	1597 bp upstream
Tssr56448	transcription start site region 56448	1609 bp upstream
Tssr56449	transcription start site region 56449	1670 bp upstream
Tssr56450	transcription start site region 56450	1686 bp upstream
Tssr56451	transcription start site region 56451	1723 bp upstream
Tssr56452	transcription start site region 56452	1784 bp upstream
Tssr56453	transcription start site region 56453	1809 bp upstream
Tssr60942	transcription start site region 60942	1989 bp upstream
Tssr60943	transcription start site region 60943	1879 bp upstream
Tssr60944	transcription start site region 60944	1832 bp upstream
Tssr60945	transcription start site region 60945	1003 bp upstream
Tssr60946	transcription start site region 60946	355 bp upstream
Tssr60947	transcription start site region 60947	1012 bp downstream
Tssr60948	transcription start site region 60948	1045 bp downstream