rs258455439 SNP Detail

Summary

• ID
  rs258455439
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:26499643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCCATGCT GCCTATTAGG
  GAGGGACTGT CTCTGGCTAG TCTTGGGTGC CTGCCTTGGG TTGTTGTCAC CTGATAGGGC
  AAAGGAGTCC CATTTTCTCT CCTCTATGAA GCCACCACCC TGCCTTGTGG GCTCTGCTCT
  TTTGCCATCC TATTGCCTGG ATTCCAGAGG TCACAGTGGA AGCTACCCAA GGTCTGGTCC
  Y
  ATTCTGTGAC TCAGGTGGAA ATGACAGAGT GGTTGGAGGG CCCTGTCTGG TAGGCATTTA
  AGCATGTGGC TGTTGTCCTC CAATCCCCTC CAACTTCCCT GCAGCCTGGT CTGGGACAGA
  CAGCAGGCTG TTTCCCAACC TCTAGCTATA ACTGGTGCCT TCAACAGCTC TGCCCAGGAG
  CCTTGTCAAA GGACTCATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353433566	MGP_WTSI_2_26465151	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258455439					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353433566	MGP_WTSI_2_26465151	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:26499643 () rs orientation: forward

Symbol	Name	Function Class
Gm20532	predicted gene 20532	within coordinates
Gm39772	predicted gene, 39772	424 bp upstream
Gm57466	predicted gene, 57466	within coordinates
Rr48585	regulatory region 48585	within coordinates
Rr372944	regulatory region 372944	628 bp upstream
Tssr16813	transcription start site region 16813	131 bp upstream
Tssr16814	transcription start site region 16814	170 bp upstream
Tssr16815	transcription start site region 16815	1057 bp upstream
Tssr23142	transcription start site region 23142	1806 bp upstream
Tssr23143	transcription start site region 23143	1630 bp upstream
Tssr23144	transcription start site region 23144	1558 bp upstream
Tssr23145	transcription start site region 23145	1468 bp upstream
Tssr23146	transcription start site region 23146	1438 bp upstream
Tssr23147	transcription start site region 23147	1370 bp upstream
Tssr23148	transcription start site region 23148	997 bp upstream
Tssr23149	transcription start site region 23149	956 bp upstream