rs258455975 SNP Detail

Summary

• ID
  rs258455975
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:86411046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTATTAGA TATTTTCTTC
  ATTTACATTT CAAATGCTTT CCCAAAAGTC CCCTATACCC TTCTCCTGCC CTGCTCCCCA
  ACCCACCCAC TCCTGCTTCC TGGCCCTGGC ATTCCCCTGT ACTGGGGCAT ATAATCTTCG
  AAAGACCAAG GACCTCTCCT CCCAGTGATG GCTGACTAGA CTATCCTCTG CTACATATGC
  S
  CTAGAGACAA GAGATCTGGG GGTACTGGTT AGTTCATATT GTTGTTCCAC CTAGAAGCTC
  ACAGTCATCT ATTGGCTGGA GCACAGGGCC CCCAATGGAG GAGCTAGAGA AAGTATCCAA
  GGAGCTGAAG GGGTCTGCAA CCACGTCTTC TTAAGAATTC CTGTGATCAG CTATTCTCTC
  AACTACCACC ACTGGCCAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401532313	MGP_WTSI_18_86562313	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	G	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258455975					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	G	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401532313	MGP_WTSI_18_86562313	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:86411046 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10352	CpG island 10352	1130 bp proximal
Cpgi10353	CpG island 10353	1880 bp proximal
Gm54041	predicted gene, 54041	within coordinates
Rr542239	regulatory region 542239	224 bp proximal
Rr542240	regulatory region 542240	857 bp proximal
Rr542241	regulatory region 542241	1541 bp proximal
Tg(Ddx4-cre)1Dcas	transgene insertion 1, Diego H Castrillon	within coordinates
Tssr152242	transcription start site region 152242	1851 bp upstream
Tssr152243	transcription start site region 152243	1872 bp upstream
Tssr152244	transcription start site region 152244	1889 bp upstream
Tssr152245	transcription start site region 152245	1997 bp upstream