rs258456099 SNP Detail

Summary

• ID
  rs258456099
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84572568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTCACAGT ACTTAATAGT
  AGTTCAATTA TTCTGCCCGA CGAACGTCTT AACACTAACG CTGAGGCTTT TTCTCAGACC
  AAAGTGATGG GGGCTCACAA AACGATTTGC CGCTCAGAAC CCGAACAGGG TGCCTGCTGA
  CTCAGGGGGA GGTATATATC AAGCCAGGAA GTTGACATTC GCAATGAAAT CTTTATGCAT
  K
  CTGAAATATC AGCTGGTATC AAACGGAACA CTTAGGGTTT GAGAGGTAAT GTACTGAGTA
  TGAAAATCAG CGACGAAGCT GGAATCTGGA GGTAGCGTAA CTAAAAAAAC AAAAAGTTAA
  GGTGAAAAGT TCTGTGTTCC TCTGAGCTTT TAAGTCTCAC TTTAACAGGA GTCATTTAAA
  AATAAAATAG TTTTTCTCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325261872	CHEV_16_84775925	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258456099					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84572568 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8384	CpG island 8384	448 bp distal
Jam2	junction adhesion molecule 2	within coordinates
Tssr139179	transcription start site region 139179	1805 bp downstream
Tssr139180	transcription start site region 139180	1776 bp downstream
Tssr139181	transcription start site region 139181	1587 bp downstream
Tssr139182	transcription start site region 139182	1535 bp downstream
Tssr139183	transcription start site region 139183	1506 bp downstream
Tssr139184	transcription start site region 139184	1483 bp downstream
Tssr139185	transcription start site region 139185	1442 bp downstream
Tssr139186	transcription start site region 139186	1386 bp downstream
Tssr139187	transcription start site region 139187	1366 bp downstream
Tssr139188	transcription start site region 139188	1348 bp downstream
Tssr139189	transcription start site region 139189	1257 bp downstream
Tssr139190	transcription start site region 139190	1241 bp downstream