rs258459347 SNP Detail

Summary

• ID
  rs258459347
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69492903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACGGTGAG GGCCTTCTAA
  CTCCACCATC AATCCCCAAG TTCTTACCCC GTCCTTGGGA ATCAGTCTCT GGAGCAGAGC
  CAAGAAAGAA CAGATAAACA GTCAAGGCTC AGTGGGAAGG AGGAGAGTTT CTAGAGAGGA
  CAGAGTTGGC TGCAGGGTTC CAAGGACAAC TAGTTGTAGC AAAGGGTGCT AACTGAGCAG
  Y
  AGCTAGCAGA CTGAGGGAAC TGAGAAACAA GGCATGATGG GAGAGTGGAA GAAACCCAGA
  CAACTGAGAT GTAAGAAAAA GTTGACAGGG AAGGAACCAG AGGTCAGAGC TTTGGTGCAG
  GAAGGGATAG GTCTATCTCC AGGACAGCAG GCTCTCTTTA TCCTAGAGAG AAGCAATAGG
  GCTAAGAGCC TCTTAGAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383787333	MGP_WTSI_11_69415579	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258459347					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383787333	MGP_WTSI_11_69415579	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69492903 () rs orientation: forward

Symbol	Name	Function Class
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide	within coordinates
Gm72066	predicted gene, 72066	within coordinates
Rr386229	regulatory region 386229	621 bp downstream
Rr450035	regulatory region 450035	1415 bp distal
Tssr3544	transcription start site region 3544	1373 bp upstream
Tssr102488	transcription start site region 102488	874 bp downstream
Tssr102489	transcription start site region 102489	828 bp downstream
Tssr108713	transcription start site region 108713	1908 bp upstream
Tssr108714	transcription start site region 108714	1840 bp upstream
Tssr108715	transcription start site region 108715	1806 bp upstream
Tssr108716	transcription start site region 108716	1502 bp upstream
Tssr108717	transcription start site region 108717	1488 bp upstream
Tssr108718	transcription start site region 108718	1424 bp upstream
Tssr108719	transcription start site region 108719	1422 bp upstream
Tssr108720	transcription start site region 108720	1406 bp upstream
Tssr108721	transcription start site region 108721	1397 bp upstream
Tssr108722	transcription start site region 108722	1319 bp upstream
Tssr108723	transcription start site region 108723	1282 bp upstream
Tssr108724	transcription start site region 108724	1236 bp upstream
Tssr108725	transcription start site region 108725	1214 bp upstream
Tssr108726	transcription start site region 108726	1112 bp upstream
Tssr108727	transcription start site region 108727	1091 bp upstream
Tssr108728	transcription start site region 108728	1047 bp upstream
Tssr108729	transcription start site region 108729	962 bp upstream
Tssr108730	transcription start site region 108730	930 bp upstream
Tssr108731	transcription start site region 108731	888 bp upstream
Tssr108732	transcription start site region 108732	827 bp upstream
Tssr108733	transcription start site region 108733	375 bp downstream
Tssr108734	transcription start site region 108734	666 bp downstream
Tssr108735	transcription start site region 108735	733 bp downstream
Tssr108736	transcription start site region 108736	771 bp downstream
Tssr108737	transcription start site region 108737	1461 bp downstream