rs258460929 SNP Detail

Summary

• ID
  rs258460929
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:8763694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTAGCCTA CCAGACCTGG
  GCTTCCCCTC CCCCAGGGGC TCTTCCCTAT ATAATCAGAC ATTTTGTTTT CTCTCCTTCC
  TCCGTCCTTC CCTCCCTCCG TCTATTTCTC CCTCAACACT CACTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT GCATCCTCTT TCTTAATTTC TCCCCCCCCC
  Y
  ACCCTCTTCC TTTCTGCATG GTGACTTTCC CTGGTCTTGT TCCTTGGGAC TGGTGAACCG
  ATTGAGAGCT GCCCCCCAAT AAACCTGCCT TTCGAACTTA ATTTGTCTTG AATTGGTTTA
  TCCTGTCGTC GGAGAAACCT GTGTCCCAGC TGCCAGCTGC ACTGGTGCTG TCTGATGCTA
  GGAGTCGAAA CAAACTCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379374666	MGP_WTSI_10_8607748	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258460929					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379374666	MGP_WTSI_10_8607748	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8763694 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1286	CpG island 1286	1184 bp distal
Gm26674	predicted gene, 26674	1072 bp downstream
Rr427412	regulatory region 427412	1390 bp distal
Sash1	SAM and SH3 domain containing 1	1880 bp upstream
Tssr96657	transcription start site region 96657	1920 bp upstream
Tssr96658	transcription start site region 96658	1874 bp upstream
Tssr96659	transcription start site region 96659	1849 bp upstream
Tssr96660	transcription start site region 96660	1825 bp upstream
Tssr96661	transcription start site region 96661	1734 bp upstream
Tssr96662	transcription start site region 96662	1705 bp upstream
Tssr96663	transcription start site region 96663	1407 bp upstream
Tssr96664	transcription start site region 96664	1338 bp upstream