rs258461432 SNP Detail

Summary

• ID
  rs258461432
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152916783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAAGACTCT AAATCTCCAG GCACTGCTCC
  CGAGAGAGCT GCCTGAGCCA CTAAGAAATG TCTTTATGAC AATGAAAAGT GACCTGGTGT
  GTGGGTGTGC AGAGAACTCC ATGCGGTCGG ACAAACATTT CCCACTCTCC TCAGCCTCCC
  Y
  ATCCTGTTAC TTGGTCCGTG GCAAATGAAT GATCTGAAAA CTACTGGTCC CAGCAAGGTC
  CAAAGTTATT TGAAGTTTCA AAGCATCATT GGACCAAAAA CAGCACAAAG TGCTGCAGTA
  AGGAAGCTGT TGCTGGGAGA AGAAGGGATG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320070047	CHEV_1_154888162	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258461432					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152916783 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D1Ertd182e	DNA segment, Chr 1, ERATO Doi 182, expressed			1608 bp distal
Nmnat2	nicotinamide nucleotide adenylyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr420581	regulatory region 420581			222 bp distal
Rr420582	regulatory region 420582			659 bp distal
Rr420583	regulatory region 420583			480 bp distal