rs258464338 SNP Detail

Summary

• ID
  rs258464338
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:57276200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTTCACTCT TCAAAGGTTC
  AGAATTACAG ATGTGTACCA CCATAATCAT ATTTTTTTAG TGGTGGTTTG TTTACATAAA
  AATATGATTC AACTCCGACT AATGTAAAGT AATAAATAAA ATTTAAAAAT GCATTTAAAG
  CCTGAATCTG TCACAAGTCA CTAGTACTAG TCATTAGTTA CATAAATAAT GAAACTTTTT
  Y
  TTTTTAGTAT TATGCTCTAT TTATTCCAAA TAATTTCCAT CTGGTCATCT CATCCTTTTT
  TTCCATGCTT CATTCCTCCT GTCACCTACT TTGTGGAGTA TGTGGCACTT CTGAAAGGTG
  AACCTTTGCT AGAGGAAATG GGTCACTGCT TTTTGGTTAT AGAGCCCAGC TCCATTTTCT
  ATTCTCTTGT TTTTTGACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324050319	CHEV_12_58330401	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258464338					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:57276200 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4649	CpG island 4649	635 bp proximal
Gm40426	predicted gene, 40426	1772 bp downstream
Mipol1	mirror-image polydactyly 1	1013 bp upstream
Prps1l3	phosphoribosyl pyrophosphate synthetase 1-like 3	998 bp upstream
Rr403305	regulatory region 403305	963 bp upstream
Tg(H2-K1-Ifnb1)10Seif	transgene insertion 10, Isabelle Seif	within coordinates
Tssr113518	transcription start site region 113518	1532 bp downstream
Tssr113519	transcription start site region 113519	992 bp upstream
Tssr113520	transcription start site region 113520	1051 bp upstream
Tssr113521	transcription start site region 113521	1100 bp upstream