rs258469524 SNP Detail

Summary

• ID
  rs258469524
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43115028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCGCTGT GGGGCCAGGC
  CATGGCGGCG CTTACGCCTG CATCGCCGCG AACCCTCGCA CTGGCCACCG CCGGCGTTCA
  GTGTTCAACC TCACTGTGGC GGGTAAGAGC AGTAGGGGCC GTCCAGCAGC AGAAGAGGGG
  AAGCACATGG AGTCCTGGGT GTCAGCAAAG AGAAGAGACA GCGAGGGGGC GTGCCCTTCA
  R
  GGAGGGAGGC GCCAATAAGG AGGAGCTAGG GCAGCTACCG GTGGGCGTGG CTGTTGGAGA
  AGATGCCAAG CTAGCTGTGA AGATTAGGGA AATAGCTGCT GATGGACGTG GCTGCCAGGA
  AAGGGAGGAG CTAGCAAGCA GTTTGTGAGA AAACCTCAAG TAAGCAAGGC CACCAGGGAA
  AGAGTGAAGC TAGCAAGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322197033	CHEV_7_50720974	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258469524					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43115028 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18932	CpG island 18932	within coordinates
Cpgi18933	CpG island 18933	558 bp proximal
Gm39000	predicted gene, 39000	within coordinates
Rr400282	regulatory region 400282	126 bp upstream
Rr645966	regulatory region 645966	740 bp distal
Rr645967	regulatory region 645967	75 bp distal
Rr645968	regulatory region 645968	within coordinates
Rr645969	regulatory region 645969	5 bp distal
Rr645970	regulatory region 645970	666 bp proximal
Rr645971	regulatory region 645971	973 bp proximal
Tssr66010	transcription start site region 66010	404 bp upstream
Tssr72134	transcription start site region 72134	1352 bp upstream
Tssr72135	transcription start site region 72135	14 bp upstream
Vsig10l	V-set and immunoglobulin domain containing 10 like	within coordinates