rs258472899 SNP Detail

Summary

• ID
  rs258472899
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147022095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCCAACTC AGACTGCTTA
  GGGAAGGCCG CACAGGGTGT GTTCTTTCTA AGTATTGCTC TCTGCAGGAG ACACTGAGAA
  CTAAGGAAGG AACCTCTTCA GGTGAAGGGT GAAGGCTGTG GGATAAGGTT CTGAACTGTT
  CTCGCCCCCC CCCACTAATG TCAGATGGCT ACACCTCTGT AGTTCAAGTA AGGATGGACA
  M
  CCCCCCCCCC CCCAGCTAGC TTTGGTAATC AAATGATTCT GCCTGGTGAA AGATGCCTTG
  GCTGCAGCTT AGCTGGGCTG AGCAGCCCCC TGGTTTCTTA TCCTCTTGGG CCTTTCCAGA
  AGTATGTGGA GGTCCCTGTG ACCATCAGTC TATTGGTGCA TGAACATATA TGGTTTGCAT
  ATACCCAGAG AAGTCCAGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320548194	CHEV_2_147005911	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258472899					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147022095 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12376	CpG island 12376	1676 bp distal
Cpgi12377	CpG island 12377	1081 bp distal
Cpgi12378	CpG island 12378	642 bp proximal
Nkx2-2	NK2 homeobox 2	within coordinates
Rr406682	regulatory region 406682	115 bp proximal