rs258473111 SNP Detail

Summary

• ID
  rs258473111
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115149583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGACCTG GAAATCATTC
  ATCACCTTTA GCACTGAGGC GTCTTAGAAA ATATATAATG TGAGCACAAT TGTTTTGTGT
  GTTCTTTTGA GACAGGGTCT CACTGGGTAG CACTAGCTGG TCTGGAACTT ATTCTGCAGA
  TCAAGTTGGC CTCCAACTCA AGAGATCTGC TTGCTCTGCC TCCCGAGTCC TGGGGTTCAG
  R
  ACAGACAGGT GCCGCCACCG CTGGACTCCA CAGTGCCATT TTTAGGCTGA AGAGCTAAAT
  TAATTTTCCA GTTAAGCTTT CAACTGCAAG ACCTTTTTCT TTCCTCTTCC AGTGTAGAAC
  AAAGAGAAGT GTGAAATGGG TTGTTTATTA ATCTCCAGAG GCGGTGAACC ATACCGACTC
  AAATCTAGCC AGGCCTGAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323484097	CHEV_10_114750734	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258473111					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115149583 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2204	CpG island 2204	1136 bp proximal
Gm10752	predicted gene 10752	1968 bp upstream
Gm67120	predicted gene, 67120	1951 bp upstream
Rab21	RAB21, member RAS oncogene family	within coordinates
Rr402237	regulatory region 402237	1786 bp upstream
Rr439191	regulatory region 439191	1586 bp distal
Rr439192	regulatory region 439192	404 bp distal
Rr439193	regulatory region 439193	1890 bp proximal
Rr439194	regulatory region 439194	1903 bp proximal
Rr439195	regulatory region 439195	1962 bp proximal
Tssr95806	transcription start site region 95806	1353 bp upstream
Tssr95807	transcription start site region 95807	1405 bp upstream
Tssr95808	transcription start site region 95808	1962 bp upstream
Tssr95809	transcription start site region 95809	1994 bp upstream
Tssr99318	transcription start site region 99318	1197 bp downstream
Tssr99319	transcription start site region 99319	1231 bp downstream
Tssr99320	transcription start site region 99320	1829 bp downstream
Tssr99321	transcription start site region 99321	1868 bp downstream
Tssr99322	transcription start site region 99322	1939 bp downstream