rs258475972 SNP Detail

Summary

• ID
  rs258475972
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:8774110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCTTGAA GCTTCAGAAG
  GTACCAGCAC TCATGGGCTT GCACTCACCC CAGATAACAT ACAAGTACAC ATAGTTAAAA
  TTAAAATAAA TTGCTGGGTG GTGGTGGCTC GTGTCTTTAA TCCCAGCACT CAGGAGGCAG
  AGGTAAGTGG ATGTCTGAGT TTAAGGCTAG TTTGGTCTAT GGGGTAAGTT CCAGGACAGC
  M
  AGGGCTACAC AGTGAATCCC TGCCTCAAAA ACAAAAGTAC AAAACTGACA GCCAGGACTA
  CACAGAGAAA CCCTGTCTCT AAAAACAAAA ACAAACAAAC AAACAAAAAA TCAAACCAAC
  CAACCAACCA ACCAAACAAA CAAACAAAAA ACCTGCTGGG TAGTGGTGGC ACATGCCTTT
  AACTTGAGAG GCAGAGGCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401708128	MGP_WTSI_19_8871236	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258475972					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401708128	MGP_WTSI_19_8871236	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:8774110 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10575	CpG island 10575	1424 bp proximal
Polr2g	polymerase (RNA) II (DNA directed) polypeptide G	within coordinates
Rr359559	regulatory region 359559	1710 bp distal
Rr359560	regulatory region 359560	910 bp distal
Rr363766	regulatory region 363766	490 bp proximal
Tssr158056	transcription start site region 158056	1639 bp downstream
Tssr158057	transcription start site region 158057	1658 bp downstream
Tssr158058	transcription start site region 158058	1675 bp downstream
Tssr158059	transcription start site region 158059	1719 bp downstream
Tssr158060	transcription start site region 158060	1749 bp downstream
Tssr158061	transcription start site region 158061	1825 bp downstream