rs258477180 SNP Detail

Summary

• ID
  rs258477180
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:91177202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCTCAAT GGAAGTCAGG
  GTACTTGGTC CTAATCTGAG GACTCCTCTG CCTCACATCT TCCCGAGTTT GGAAACAGGT
  CCTCATGCTG ACAAACGCTT TACTCCCTGA ACCCAAGTGC CTCATTTCAA AAGAAATCTT
  AGGGTCTAGG GTGTGGGGGG AGGGGGGAGA CGGGGGGGGG GGGGAGGCGG GGGGAGGGGG
  S
  GGGTAGCTCA AAGGTAGTGC TTTGCATGTG AGACCTCCTG AGATTCATTC CCCAGAATTG
  CTAAGAAAAT CACTGGAAAC CTGACGCTCC TTGTTCTTTT CCACAGAAAA TATCCTCTTT
  CCAAGGCCCT ACCTCTCTAG GAGTCTTGCC GAATTCTCTC CCAAAGTAGG CTATCTCCAG
  TCCCACAGGG ACTGAGAATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss350472906	MGP_WTSI_1_93146057	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs258477180					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350472906	MGP_WTSI_1_93146057	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:91177202 () rs orientation: forward

Symbol	Name	Function Class
Cpgi571	CpG island 571	416 bp proximal
Rr366958	regulatory region 366958	465 bp upstream
Tssr8065	transcription start site region 8065	713 bp upstream
Tssr8066	transcription start site region 8066	817 bp upstream
Tssr8067	transcription start site region 8067	831 bp upstream
Tssr8068	transcription start site region 8068	1002 bp upstream
Tssr8069	transcription start site region 8069	1095 bp upstream
Tssr12938	transcription start site region 12938	560 bp downstream
Tssr12939	transcription start site region 12939	1892 bp downstream
Ube2f	ubiquitin-conjugating enzyme E2F (putative)	210 bp upstream