rs258481635 SNP Detail

Summary

• ID
  rs258481635
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:151924494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAAAGTTG TGGCCCTAGA
  ATACGGCTGG AGTGAGGGGT GACAGAGAGA GGACGCCCCT AAAGGGCTAG TGGGGGTGGC
  TTGTAATACC CTCACACTGT TGAGGGAGAG AGGCTGCCTG CCTGCGTGTT CCCTGGTGGG
  AAGGTAAGGG ACCAGGACTG CCAGTCCCTG GGGAGAGGAG ATTGGCTCTC TGGGCAAAGT
  R
  GGAGCACCCG CCCCCCTTTC AACCATACTC CCCCTGGCAA TGGCAGACAA GTGCTCTCCA
  GCCCTCCTCT CTCCAACTCT TTTGTTACCC TCCACCACAT GCCTGCCAAA GGCTGGGCCT
  GTCTTAGGGA CTCAAAGGAT GAGATTATTG GAAGGGATTT CCCCAGCATG CCTCCTGGTC
  CCCTAGACTG TACCCCCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356144214	MGP_WTSI_2_151908310	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	A	A	A	G	A	G	A	G	G	A	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258481635					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	A	A	A	G	A	G	A	G	G	A	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356144214	MGP_WTSI_2_151908310	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151924494 () rs orientation: forward

Symbol	Name	Function Class
AA387200	expressed sequence AA387200	1132 bp upstream
Cpgi12434	CpG island 12434	1571 bp distal
Cpgi12435	CpG island 12435	within coordinates
Gm75114	predicted gene, 75114	1081 bp downstream
Rr567275	regulatory region 567275	1127 bp distal
Rr567276	regulatory region 567276	1035 bp distal
Rr567277	regulatory region 567277	within coordinates
Rr567278	regulatory region 567278	1638 bp proximal
Scrt2	scratch family zinc finger 2	Intron
Tssr20749	transcription start site region 20749	1744 bp downstream
Tssr20750	transcription start site region 20750	1700 bp downstream
Tssr20751	transcription start site region 20751	1668 bp downstream
Tssr20752	transcription start site region 20752	1635 bp downstream
Tssr20753	transcription start site region 20753	1620 bp downstream
Tssr20754	transcription start site region 20754	1599 bp downstream
Tssr20755	transcription start site region 20755	1437 bp downstream
Tssr20756	transcription start site region 20756	1322 bp downstream
Tssr20757	transcription start site region 20757	1184 bp downstream
Tssr20758	transcription start site region 20758	950 bp downstream
Tssr20759	transcription start site region 20759	931 bp downstream
Tssr20760	transcription start site region 20760	749 bp downstream
Tssr20761	transcription start site region 20761	681 bp downstream