rs258484685 SNP Detail

Summary

• ID
  rs258484685
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:43017888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGTTCAC GTTTAGAGGT
  TCTTCGGAAC TCCCGGGCTG GAAACTTTTA TTCTTTAAGA GAATGTATTC GTTCCCGGTG
  TCAAATGCTT TTGATGACTG CGTGCGAGCC CAGGTCCACG GGCCCCCGAC AGTGTTAGGC
  AAACCTGCGC GCGCGCGCAC ACACACACAC ACACACACAC ACACACACAC AGGTTTTGGG
  R
  TGAGCCAATC ACCTGGGGCA CCTGCTGGCC TAGTCCCACA GCACGGAGGG GAAAGGGGTG
  GGGGGATGGC CAGAAGAGGC TGTGGAGAAA GGATCTGGGC CCACACTTAA GCCAGGAGTT
  CCTGATATAA ATATTGCTTT TAGGCTGTTT TGCCTTGGCA AAATGAACTG TATTGTTTGC
  CAAATTGAGA ACGCATGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377380667	MGP_WTSI_9_42914676	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258484685					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377380667	MGP_WTSI_9_42914676	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:43017888 () rs orientation: forward

Symbol	Name	Function Class
Arhgef12	Rho guanine nucleotide exchange factor 12	819 bp upstream
Cpgi21624	CpG island 21624	within coordinates
Rr677324	regulatory region 677324	1118 bp distal
Rr677325	regulatory region 677325	116 bp distal
Rr677326	regulatory region 677326	836 bp proximal
Rr677327	regulatory region 677327	885 bp proximal
Tssr89074	transcription start site region 89074	800 bp upstream
Tssr89075	transcription start site region 89075	719 bp upstream
Tssr89076	transcription start site region 89076	567 bp upstream
Tssr89077	transcription start site region 89077	497 bp upstream
Tssr89078	transcription start site region 89078	425 bp upstream
Tssr89079	transcription start site region 89079	397 bp upstream
Tssr89080	transcription start site region 89080	425 bp downstream
Tssr89081	transcription start site region 89081	509 bp downstream
Tssr89082	transcription start site region 89082	544 bp downstream