rs258486186 SNP Detail

Summary

• ID
  rs258486186
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107562653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aatcctgtc tGTGGGGAAA AAAAATAGTC
  TGGCTTTGTG GAAGGAAAGG TCTGCTTAGC GTATCAATTC TTATCACTAA GAAGAACACA
  GGACACTGTA ACAGGTTGTG ACAGGTTAAC GCTGGGACTG TAGGGATGGG TTCGTTCGTG
  Y
  CCTATGCTAA ACACTTTAAC AGTAAATCTG CTCTCTCCAC CTCGCCTGCT TTTGTCTTCT
  ATGAGGACAC AGCAAGCAGG GAGGGCCTTG TTAGATGGAA GAACCAGGCT CGTCAacttc
  ctggcttcca gaatcatgag ccaaatgaac                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321250211	CHEV_4_107378061	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258486186					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107562653 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	within coordinates
Gm57502	predicted gene, 57502	872 bp upstream
Gm70287	predicted gene, 70287	within coordinates
Rr597045	regulatory region 597045	972 bp distal
Rr597046	regulatory region 597046	1057 bp distal
Tssr38261	transcription start site region 38261	1574 bp upstream
Tssr38262	transcription start site region 38262	1600 bp upstream
Tssr38263	transcription start site region 38263	1610 bp upstream
Tssr38264	transcription start site region 38264	1620 bp upstream
Tssr38265	transcription start site region 38265	1638 bp upstream