rs258490616 SNP Detail

Summary

• ID
  rs258490616
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99242445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCCTTTG TCTTTCGCGC
  TCACAGGCCC ACACCTCCTT ACCACCTGAC TCAATGTGTT TGCACAGAGT GTGGAAGATG
  CACACGTGAG GGAGAGTTGC AAAGACAGTG GCTGGCTGTG AGTGCAATGT TCAATGTCCA
  ACGTGAGACC CGTGACATCC TTTGGGACTT TATTGCCCCA GCGGGATTGT TCTCTCTGTT
  Y
  CCAGACACAC CAAGTTTGTT CAACATCAAA GCTTTCAGGT TCCTCTCTGC AGAATGGCCT
  CCTCCTTAGT CTTCCATAGA GTACAGTAGA GGTGAGGATG TTACTCGATG TTTTCCATTC
  TACCAAACCC TGTTTATAAC AACAAACTGC TTTCCTAAGT TAACTGTAAG AGACTATTGA
  GAATATGGCA TTAAAATCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323135633	CHEV_9_99260811	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258490616					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99242445 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22193	CpG island 22193	1687 bp distal
Esyt3	extended synaptotagmin-like protein 3	1835 bp upstream
Rr198328	regulatory region 198328	356 bp proximal
Rr206935	regulatory region 206935	1644 bp distal
Tssr91051	transcription start site region 91051	1840 bp upstream