rs258493906 SNP Detail

Summary

• ID
  rs258493906
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122524117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCGCCGAT CTGGGCTGAA
  CTAACCAGCT CTGCTTTGGA GAAGGGGCTG GAGCCCCGCC ACCGGCGCCT TGGGGCAACG
  GCCGTCGAGC AGCTGGTGCT GGCCGCCCGA GCCGGGAGGG CGACTCTCGC CGGGCGGGGA
  TGGTGGACGA GCCGGTGGGG ACTCGCCCGA GCGCGGCCGC CACTCGGCCG GGCGCTGCCC
  R
  CCAGGGGGCG ACGCAACGCG GGGTCCGCAG CCGGCGACCC GCAGCGAAGA GGCGGCGGGG
  GCAGTAGGGG AGCCGGTCGG GCACTCACGG AACTCCGTCG GCCCCCAGAG TCTCCCGAGT
  CCACCATCCG AGGAGTTCGC AAACGAGCGC CCCACCTTTG CTATGTTGCC CTTTGGAGAC
  AAAACGAGGT ACTTCCTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359508371	MGP_WTSI_3_122433386	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258493906					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359508371	MGP_WTSI_3_122433386	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122524117 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13771	CpG island 13771	within coordinates
Pde5a	phosphodiesterase 5A, cGMP-specific	within coordinates
Rr584392	regulatory region 584392	1511 bp distal
Rr584393	regulatory region 584393	1525 bp distal
Rr584394	regulatory region 584394	888 bp distal
Rr584395	regulatory region 584395	within coordinates
Rr584396	regulatory region 584396	within coordinates
Tssr31509	transcription start site region 31509	1473 bp downstream
Tssr31510	transcription start site region 31510	1453 bp downstream
Tssr31511	transcription start site region 31511	1334 bp downstream
Tssr31512	transcription start site region 31512	1286 bp downstream
Tssr31513	transcription start site region 31513	1235 bp downstream
Tssr31514	transcription start site region 31514	733 bp downstream
Tssr31515	transcription start site region 31515	599 bp downstream
Tssr31516	transcription start site region 31516	574 bp downstream
Tssr31517	transcription start site region 31517	539 bp downstream
Tssr31518	transcription start site region 31518	411 bp downstream
Tssr31519	transcription start site region 31519	349 bp downstream
Tssr31520	transcription start site region 31520	315 bp downstream
Tssr31521	transcription start site region 31521	229 bp downstream
Tssr31522	transcription start site region 31522	207 bp downstream