rs258495807 SNP Detail

Summary

• ID
  rs258495807
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156079588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTACGTT GTTGTGTTGT
  TGGTGTGTGG GGTTAGGGTA CAGGAAGTGC TGCAACTTTA GCCTGGCCAA GTACATTTCT
  CCAGTTTCTT TTTTAAAAAG TAAAAACATC ATTTGTTGTT TTCCTTTTTC ACTTTTTCTT
  CTTCATTCCC CCCCCCCCCC CCCCCCCGGT AGTGCTGGGA TCAGCCCTAG GACTTGAGCA
  T
  ACCAGACAAG TGTTTCACCC CTGCCTGAGC TATATATATA TAATATATAT ATATATATAT
  CCCTAGCCCC TTGTGTGTGG ATCTTGTTTG GAGATAGGAT CTTACTGTTT ATCCATGGCT
  GGCTTGGAGC TCACAGTGTG GACCAGACTG GCCTTGAACT CAGAGATCCA CCCATGTCCA
  CCTCCTGTGT GCTGGGATTA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321444405	CHEV_4_155369240	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258495807					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156079588 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15496	CpG island 15496	1294 bp distal
Rr100725	regulatory region 100725	587 bp distal
Rr377473	regulatory region 377473	758 bp downstream
Sdf4	stromal cell derived factor 4	within coordinates
Tssr40749	transcription start site region 40749	1944 bp downstream
Tssr40750	transcription start site region 40750	1835 bp downstream
Tssr40751	transcription start site region 40751	1815 bp downstream
Tssr40752	transcription start site region 40752	1676 bp downstream
Tssr40753	transcription start site region 40753	1208 bp upstream