rs258500471 SNP Detail

Summary

• ID
  rs258500471
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90017633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCGACTTT CCCCGCTCAG
  GCTCCTCGGG AACTTTCTCA GTCCGCACGC TCCAGGAGCC GGAGCTACCC TCCGCCCCGC
  CCCCAGCGTG CCCCGCGGCC AGGGAGCTCC ACGAAGGGCG GGCGGAGGCC GCGGGTAGCG
  ATTGGTTCCG TGCCAAGGTG GGCGTGGTCA GACTCAGGCC TATAAAAGCT CCGTGGCGCC
  R
  GGGCCTCGTT TTTTTGCGCG GTCCTTTCCT GCGGCGCCTT CCGTCCGTCG GCTTCTCGTC
  TTGCTCTCTC TGGTCCCTCC GGAGGAGGCC GCCGCGCGTC TCCCGGGGAA GCATGGCGAT
  GAAAGCGGTG TGCGTGCTGA AGGGCGACGG TCCGGTGCAG GGAACCATCC ACTTCGAGCA
  GAAGGCAAGG CCCGGGGCGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss397289521	MGP_WTSI_16_90220990	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	G	A	G	A	G	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs258500471					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	G	A	G	A	G	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397289521	MGP_WTSI_16_90220990	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90017633 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8420	CpG island 8420	within coordinates
Rr519072	regulatory region 519072	within coordinates
Rr519073	regulatory region 519073	20 bp proximal
Rr519074	regulatory region 519074	28 bp proximal
Sod1	superoxide dismutase 1, soluble	17 bp upstream
Tssr139276	transcription start site region 139276	1059 bp downstream
Tssr139277	transcription start site region 139277	208 bp downstream
Tssr139278	transcription start site region 139278	156 bp downstream
Tssr139279	transcription start site region 139279	135 bp downstream
Tssr139280	transcription start site region 139280	113 bp downstream
Tssr139281	transcription start site region 139281	104 bp downstream
Tssr139282	transcription start site region 139282	20 bp downstream
Tssr139283	transcription start site region 139283	2 bp upstream